Basic Information
Locus ID:
Ah020111
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 26786302 | 26799230 | + | Ah020111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 55,081.55 Da | 52.09 | 64.35 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 426 | 466 | 1.72013E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 425 | 471 | 2.8E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 426 | 472 | 6.56E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 411 | 476 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 427 | 465 | 5.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 427 | 466 | 11.338544 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021757089.1 | probable E3 ubiquitin-protein ligase LUL3 [Chenopodium quinoa] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P6QXD7 | RING-type E3 ubiquitin transferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0418321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology