Basic Information
Locus ID:
Ah020036
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 24023169 | 24040128 | + | Ah020036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 29,756.87 Da | 48.88 | 75.86 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.43185E-29 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.0E-16 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 241 | 272 | 1.3E-9 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 194 | 3.6E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 203 | 1.8E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 241 | 276 | 9.29E-10 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 1.38E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 238 | 273 | 7.2E-11 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 199 | 1.6E-19 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.1E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 156 | 196 | 1.4E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 226 | 7.6E-69 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 197 | 12.209535 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.802267 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 122 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021751706.1 | probable ubiquitin receptor RAD23a [Chenopodium quinoa] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8BCQ7 | Ubiquitin receptor RAD23 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology