Basic Information
Locus ID:
Ah019997
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 22683463 | 22684662 | - | Ah019997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 46,397.47 Da | 44.54 | 85.89 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 84 | 1.96E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 75 | 5.4E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021717831.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MAH3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 9 | Ah018602, Ah018642, Ah019997, Ah021970, Ah021971, Ah022635 ... |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg56203, Sbi_jg56204 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26671 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00014153, GOSA_00014155, GOSA_00014156, GOSA_00014159 ... |
| Amaranthaceae | Suaeda glauca | 18 | Sgl12082, Sgl12087, Sgl12088, Sgl12091, Sgl12194, Sgl12277 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015744, gene:ENSEOMG00000043764 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015240, CQ.Regalona.r1.3BG0014600 |