Basic Information
Locus ID:
Ah019962
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 22029605 | 22040100 | - | Ah019962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 131,052.51 Da | 64.89 | 55.88 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 3.75249E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 742 | 871 | 2.22522E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 547 | 717 | 5.7E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 7.1E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 754 | 862 | 6.3E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 595 | 877 | 1.32E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 5.99E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 732 | 903 | 6.7E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 54 | 1.7E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 473 | 731 | 2.3E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 542 | 745 | 2.1E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 778 | 862 | 1.2E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 9.4E-8 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 554 | 728 | 31.320377 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 757 | 901 | 25.168282 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.7036 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 674 | 682 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1060 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 977 | 993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1084 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW7 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology