Basic Information
Locus ID:
Ah019956
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 21899966 | 21907054 | + | Ah019956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 50,610.70 Da | 45.86 | 78.93 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 106 | 423 | 3.5E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 68 | 456 | 5.19E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 64 | 456 | 2.4E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 286 | 306 | 3100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 263 | 284 | 3500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 316 | 337 | 16.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 213 | 243 | 590.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 345 | 366 | 2800.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 293 | 306 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021756995.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXC5 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_137910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology