Basic Information
Locus ID:
Ah019856
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 19752269 | 19762874 | - | Ah019856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 53,095.75 Da | 61.32 | 86.74 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 247 | 295 | 5.29637E-14 | - |
| Pfam | PF12906 | RING-variant domain | 247 | 294 | 1.5E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 298 | 1.94E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 302 | 5.9E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 246 | 295 | 2.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 239 | 301 | 18.242662 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 231 | - | - |
| Coils | Coil | Coil | 477 | 482 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021724637.1 | uncharacterized protein LOC110691961 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QGW0 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_180040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology