Basic Information
Locus ID:
Ah019842
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 19322414 | 19323646 | - | Ah019842 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 45,541.05 Da | 44.15 | 79.58 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 125 | 176 | 8.4E-6 | - |
| Pfam | PF01344 | Kelch motif | 181 | 221 | 1.1E-9 | IPR006652 |
| Pfam | PF00646 | F-box domain | 10 | 50 | 3.6E-5 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 99 | 353 | 5.23E-40 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 61 | 1.96E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 73 | 355 | 2.5E-36 | IPR015915 |
| SMART | SM00612 | kelc_smart | 138 | 186 | 1.2E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 188 | 235 | 6.1E-6 | IPR006652 |
| SMART | SM00256 | fbox_2 | 13 | 53 | 1.1E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021774721.1 | F-box/kelch-repeat protein SKIP20-like [Chenopodium quinoa] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M5G1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology