Basic Information
Locus ID:
Ah019753
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 17953012 | 17954271 | - | Ah019753 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 46,620.28 Da | 40.66 | 80.43 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13415 | Galactose oxidase, central domain | 147 | 192 | 1.9E-5 | - |
| Pfam | PF01344 | Kelch motif | 196 | 230 | 4.6E-9 | IPR006652 |
| Pfam | PF00646 | F-box domain | 20 | 57 | 9.4E-6 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 108 | 362 | 7.32E-38 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 70 | 9.29E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 79 | 330 | 7.1E-35 | IPR015915 |
| SMART | SM00612 | kelc_smart | 147 | 195 | 2.3E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 197 | 244 | 6.1E-6 | IPR006652 |
| SMART | SM00256 | fbox_2 | 22 | 62 | 2.4E-6 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021774721.1 | F-box/kelch-repeat protein SKIP20-like [Chenopodium quinoa] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M5G1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology