Basic Information
Locus ID:
Ah019682
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Polygalacturonase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 16114945 | 16121502 | + | Ah019682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.89 | 17,000.62 Da | 36.99 | 99.93 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 65 | 140 | 7.7E-18 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 65 | 141 | 2.55E-23 | IPR011050 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 5 | 64 | 5.42E-12 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 18 | 65 | 7.2E-11 | IPR012334 |
| Gene3D | G3DSA:2.160.20.10 | - | 66 | 147 | 4.4E-22 | IPR012334 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43870.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021774629.1 | polygalacturonase-like [Chenopodium quinoa] | 0 |
| P24548 | Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M5K3 | Polygalacturonase-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology