Basic Information
Locus ID:
Ah019653
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 15589373 | 15596667 | + | Ah019653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 33,172.84 Da | 42.72 | 74.42 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 43 | 124 | 1.4E-15 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 39 | 131 | 2.22E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 15 | 144 | 3.9E-23 | IPR036431 |
| SMART | SM00501 | bright_3 | 40 | 129 | 8.2E-22 | IPR001606 |
| SMART | SM01014 | ARID_2 | 36 | 124 | 2.9E-21 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 39 | 128 | 22.098978 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 280 | - | - |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021752740.1 | high mobility group B protein 10-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M5N6 | ARID domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology