Basic Information
Locus ID:
Ah019451
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 12544965 | 12545177 | + | Ah019451 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 8,460.60 Da | 44.12 | 64.00 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 4 | 48 | 2.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 54 | 4.24E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 54 | 1.8E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 5 | 47 | 6.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 5 | 48 | 11.795887 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021856373.1 | RING-H2 finger protein ATL39-like [Spinacia oleracea] | 0 |
| Q66HG0 | E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus OX=10116 GN=Rnf13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RR39 | Putative RING/U-box superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0555011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology