Basic Information
Locus ID:
Ah019086
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 8513814 | 8518870 | + | Ah019086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 50,636.87 Da | 40.22 | 65.97 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 311 | 393 | 1.6E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 411 | 442 | 3.1E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 311 | 395 | 8.2E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| Coils | Coil | Coil | 300 | 337 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_021730233.1 | uncharacterized protein LOC110697193 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N6N4 | PAPA-1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology