Basic Information
Locus ID:
Ah018984
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 7565986 | 7575934 | + | Ah018984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 48,579.39 Da | 36.42 | 71.05 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 350 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 190 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 311 | 0.0033 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 125 | 146 | 4.1E-5 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 121 | 146 | 4.45E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 144 | 439 | 2.01E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 231 | 446 | 1.6E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 230 | 1.0E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 401 | 438 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 190 | 1.8E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 32 | 55 | 0.03 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 123 | 147 | 3.6E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 314 | 351 | 5.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 398 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 311 | 8.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 267 | 29.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 30 | 56 | 11.075008 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 190 | 8.992876 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 281 | 314 | 9.203785 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 121 | 148 | 13.797847 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 320 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 350 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 199 | 11.544415 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 298 | 312 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 177 | 191 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 298 | 312 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 338 | 352 | 1.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 87 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021765203.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0J9 | C3H1-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology