Basic Information
Locus ID:
Ah018897
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 6813044 | 6816335 | + | Ah018897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 85,685.99 Da | 38.49 | 92.32 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 397 | 696 | 1.25851E-159 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 50 | 348 | 1.70741E-152 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 401 | 692 | 6.0E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 397 | 697 | 8.89E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 48 | 348 | 6.54E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 395 | 698 | 5.8E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 49 | 349 | 6.7E-28 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 396 | 697 | 29.043226 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 50 | 349 | 26.964481 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_021741895.1 | glycerophosphodiester phosphodiesterase GDPDL7-like [Chenopodium quinoa] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N884 | glycerophosphodiester phosphodiesterase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology