Basic Information
Locus ID:
Ah018816
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 6084589 | 6096013 | + | Ah018816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 203,692.86 Da | 46.63 | 81.52 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 979 | 1148 | 1.24338E-33 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 889 | 929 | 8.02681E-20 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1787 | 1827 | 5.24982E-18 | - |
| CDD | cd01989 | STK_N | 12 | 170 | 2.71082E-41 | - |
| Pfam | PF04564 | U-box domain | 886 | 955 | 5.1E-16 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 602 | 837 | 3.1E-38 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1500 | 1732 | 3.0E-38 | IPR000719 |
| Pfam | PF04564 | U-box domain | 1784 | 1852 | 3.2E-15 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1478 | 1756 | 1.62E-61 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1774 | 1853 | 2.83E-22 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 875 | 954 | 6.98E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 580 | 858 | 1.27E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 886 | 959 | 8.9E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1570 | 1783 | 7.8E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1784 | 1855 | 1.6E-24 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 569 | 671 | 2.5E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1467 | 1569 | 9.0E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 672 | 885 | 5.5E-46 | - |
| SMART | SM00504 | Ubox_2 | 888 | 950 | 2.3E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 1497 | 1762 | 4.0E-24 | IPR000719 |
| SMART | SM00220 | serkin_6 | 599 | 864 | 1.3E-26 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 1786 | 1848 | 5.7E-22 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 599 | 864 | 33.813488 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1782 | 1855 | 26.901541 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 884 | 957 | 28.794519 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1497 | 1762 | 33.544941 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1615 | 1627 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 717 | 729 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1503 | 1524 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 605 | 626 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1194 | 1222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1446 | 1464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1358 | 1376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1355 | 1376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1430 | 1464 | - | - |
| Coils | Coil | Coil | 473 | 493 | - | - |
| Coils | Coil | Coil | 1405 | 1433 | - | - |
| Coils | Coil | Coil | 1762 | 1782 | - | - |
| Coils | Coil | Coil | 864 | 884 | - | - |
| Coils | Coil | Coil | 514 | 534 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25160.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021726830.1 | U-box domain-containing protein 35-like [Chenopodium quinoa] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MKS8 | Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018816 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15369 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01894, Sgl01917, Sgl07075 |