Basic Information
Locus ID:
Ah018667
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 4692886 | 4696888 | + | Ah018667 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 45,004.11 Da | 47.92 | 90.83 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 158 | 200 | 3.48668E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 230 | 262 | 4.9E-7 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 157 | 200 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 206 | 2.22E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 206 | 2.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 199 | 6.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 200 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 230 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021729156.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6J0ZHC5 | putative RING-H2 finger protein ATL21B OS=Herrania umbratica OX=108875 GN=LOC110409334 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology