Basic Information
Locus ID:
Ah018666
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 4687200 | 4692881 | + | Ah018666 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 79,493.41 Da | 50.50 | 86.86 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 245 | 287 | 5.98144E-16 | - |
| Pfam | PF13639 | Ring finger domain | 244 | 287 | 4.0E-10 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 311 | 380 | 4.6E-18 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 2 | 46 | 4.3E-8 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 594 | 662 | 8.2E-10 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 291 | 9.72E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 290 | 3.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 245 | 286 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 245 | 287 | 11.692616 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021760816.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L2N6 | GUB_WAK_bind domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology