Basic Information
Locus ID:
Ah018634
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 4462888 | 4467716 | - | Ah018634 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 62,249.52 Da | 39.73 | 91.36 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 454 | 483 | 0.0084 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 453 | 487 | 4.97E-6 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 91 | 1.23E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 55 | 3.3E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 432 | 487 | 4.1E-5 | - |
| SMART | SM00256 | fbox_2 | 21 | 63 | 6.7 | IPR001810 |
| SMART | SM00256 | fbox_2 | 454 | 495 | 2.0 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 127 | 341 | 1.0E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021764096.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803L2L7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16616 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018633, Ah018634, Ah034289 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg35729 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3693, Seu_jg3694 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020056, GOSA_00020058, GOSA_00020059 |
| Amaranthaceae | Suaeda glauca | 24 | Sgl01351, Sgl01352, Sgl01353, Sgl01354, Sgl01355, Sgl06434 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000028850, gene:ENSEOMG00000030685 ... |
| Amaranthaceae | Chenopodium quinoa | 9 | CQ.Regalona.r1.2BG0014960, CQ.Regalona.r1.3AG0004980 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613212 |