Basic Information
Locus ID:
Ah018611
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 4204605 | 4217499 | + | Ah018611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 193,787.34 Da | 45.46 | 70.38 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1651 | 1692 | 2.6E-5 | IPR003347 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 755 | 819 | 4.8E-5 | IPR018866 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1074 | 1740 | 4.94E-23 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1059 | 1362 | 6.5E-83 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1560 | 1726 | 4.5E-41 | - |
| SMART | SM00384 | AT_hook_2 | 346 | 358 | 3.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 580 | 592 | 140.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 660 | 672 | 8.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 462 | 474 | 2.5 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1188 | 1717 | 8.3E-54 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 6 | 51 | 14.475859 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 759 | 805 | 8.904299 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1195 | 1717 | 18.679432 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 397 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_021763956.1 | uncharacterized protein LOC110728617 [Chenopodium quinoa] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L2J9 | WRC domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology