Basic Information
Locus ID:
Ah018392
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 2403629 | 2406640 | + | Ah018392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 48,795.34 Da | 46.54 | 70.23 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 144 | 413 | 8.59953E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 328 | 0.015 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 161 | 218 | 9.3E-8 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 277 | 4.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 413 | 7.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 93 | 413 | 5.04E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 70 | 416 | 4.0E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 286 | 328 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 234 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 413 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 371 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 4.0E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 381 | 414 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 277 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 286 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 414 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 400 | 414 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_021762135.1 | cell division cycle 20.2, cofactor of APC complex-like [Chenopodium quinoa] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology