Basic Information
Locus ID:
Ah018388
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 2375666 | 2383981 | + | Ah018388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 95,544.87 Da | 38.09 | 79.36 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 381 | 437 | 4.72817E-28 | - |
| Pfam | PF01426 | BAH domain | 120 | 231 | 2.4E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 448 | 799 | 2.6E-36 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 384 | 438 | 6.4E-11 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 379 | 438 | 4.64E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 271 | 799 | 1.56E-78 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 380 | 816 | 4.6E-189 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 257 | 364 | 2.0E-14 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 55 | 219 | 5.5E-49 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 600 | 765 | 4.6E-189 | - |
| SMART | SM00439 | BAH_4 | 117 | 234 | 1.0E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 381 | 440 | 3.0E-11 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 271 | 806 | 48.156189 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 117 | 234 | 18.595215 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 382 | 438 | 11.779201 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 452 | 464 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 272 | 288 | 3.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 495 | 509 | 3.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 541 | 554 | 3.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021762079.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X2 [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A803L224 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology