Basic Information
Locus ID:
Ah018272
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 1300188 | 1301409 | + | Ah018272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 35,089.17 Da | 31.55 | 99.90 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 166 | 232 | 9.83094E-7 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 4 | 71 | 8.93659E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 175 | 232 | 6.5E-8 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 11 | 74 | 6.7E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 72 | 6.56E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 77 | 142 | 6.56E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 236 | 304 | 1.94E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 159 | 234 | 1.61E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 79 | 159 | 4.3E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 3 | 73 | 3.1E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 234 | 306 | 1.0E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 160 | 233 | 2.9E-8 | - |
| SMART | SM00213 | ubq_7 | 4 | 73 | 0.88 | IPR000626 |
| SMART | SM00213 | ubq_7 | 82 | 157 | 16.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 236 | 306 | 6.2 | IPR000626 |
| SMART | SM00213 | ubq_7 | 164 | 235 | 4.1 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 4 | 72 | 9.395295 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 236 | 304 | 10.244535 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 164 | 232 | 11.159102 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55060.1 | ubiquitin 12. Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product | 0 |
| RefSeq | XP_048497256.1 | polyubiquitin [Beta vulgaris subsp. vulgaris] | 0 |
| Q3E7K8 | Polyubiquitin 12 OS=Arabidopsis thaliana OX=3702 GN=UBQ12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |