Basic Information
Locus ID:
Ah017948
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 99102075 | 99121044 | + | Ah017948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 140,233.75 Da | 45.16 | 77.42 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 516 | 821 | 5.85464E-90 | - |
| CDD | cd18793 | SF2_C_SNF | 1122 | 1229 | 2.36325E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 536 | 899 | 3.2E-69 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1119 | 1219 | 1.5E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 502 | 821 | 1.73E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 830 | 1276 | 9.84E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 974 | 1009 | 7.07E-7 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1043 | 1276 | 5.6E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 836 | 956 | 3.6E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 673 | 834 | 5.5E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 967 | 1017 | 1.4E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 485 | 672 | 1.0E-21 | IPR038718 |
| SMART | SM00487 | ultradead3 | 512 | 800 | 1.1E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1136 | 1219 | 2.0E-18 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1113 | 1272 | 15.493309 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 531 | 783 | 13.338413 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 981 | 990 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 713 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPR1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology