Basic Information
Locus ID:
Ah017785
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 97297045 | 97298385 | - | Ah017785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 49,707.46 Da | 40.01 | 108.14 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 77 | 3.49116E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 102 | 4.3E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 107 | 5.3E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 150 | 427 | 1.21E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 117 | 422 | 3.0E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 109 | 3.3E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 1.6E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 35.986073 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_021719575.1 | U-box domain-containing protein 20-like [Chenopodium quinoa] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LKZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology