Basic Information
Locus ID:
Ah017027
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 85740279 | 85746074 | - | Ah017027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 25,582.56 Da | 53.57 | 70.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 104 | 161 | 1.56953E-10 | - |
| Pfam | PF12906 | RING-variant domain | 104 | 160 | 1.3E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 163 | 3.88E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 171 | 2.9E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 103 | 161 | 8.2E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 96 | 167 | 18.469154 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021772026.1 | uncharacterized protein LOC110736175 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QVC1 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_137110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology