Basic Information
Locus ID:
Ah016922
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 82443401 | 82445209 | - | Ah016922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 55,131.12 Da | 57.81 | 72.08 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 180 | 204 | 0.039 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 384 | 472 | 1.7E-32 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 207 | 236 | 2.7E-6 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 123 | 256 | 3.4E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 257 | 344 | 5.0E-7 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 177 | 205 | 8.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 207 | 239 | 1.9E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 204 | 238 | 11.454616 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021772239.1 | pentatricopeptide repeat-containing protein At2g15690-like [Chenopodium quinoa] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803N2S6 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology