Basic Information
Locus ID:
Ah016045
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 40107100 | 40108242 | - | Ah016045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 43,638.65 Da | 40.32 | 91.97 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 45 | 1.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 50 | 4.45E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 56 | 2.4E-8 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 3.5E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 123 | 300 | 1.2E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 10.530751 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021747417.1 | putative F-box protein At5g52610 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MP44 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah016045, Ah039023 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8BG0013080, CQ.Regalona.r1.8BG0014880 |