Basic Information
Locus ID:
Ah015172
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 12035535 | 12042153 | - | Ah015172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 45,098.90 Da | 37.93 | 88.90 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 324 | 7.9E-120 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 324 | 1.17E-57 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 328 | 381 | 2.62E-8 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 387 | 6.6E-109 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 291 | 3.5E-4 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 59 | 380 | 1.5E-136 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 258 | 329 | 26.530567 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 249 | 37.028084 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 270 | 278 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 220 | 249 | 3.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 3.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 300 | 329 | 3.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 3.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 353 | 370 | 3.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 267 | 295 | 3.6E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 59 | 385 | 42.970688 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 417 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021715099.1 | DNA repair protein recA homolog 3, mitochondrial-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MGE7 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology