Basic Information
Locus ID:
Ah015102
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 10680550 | 10692163 | + | Ah015102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 84,687.99 Da | 50.04 | 84.17 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 243 | 4.12112E-97 | - |
| CDD | cd18794 | SF2_C_RecQ | 244 | 394 | 3.44517E-58 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 277 | 383 | 4.6E-11 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 398 | 469 | 5.3E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 222 | 2.1E-14 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 45 | 397 | 1.64E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 244 | 487 | 1.4E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 9 | 243 | 1.0E-80 | IPR027417 |
| SMART | SM00490 | helicmild6 | 287 | 385 | 1.2E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 252 | 6.5E-23 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 473 | 7.2E-128 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 263 | 423 | 13.850107 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 236 | 19.575514 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 760 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021750141.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M8N9 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology