halophFGD

Basic Information

Locus ID: Ah015048

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Oligouridylate-binding protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_481_HRSCAF_623	9879211	9884880	+	Ah015048

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.87	10,156.42 Da	45.24	57.63	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	18	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	32	-	-

KEGG Pathway

KO Term:

K13201 (nucleolysin TIA-1/TIAR)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17370.2	oligouridylate binding protein 1B.
RefSeq	XP_021756703.1	oligouridylate-binding protein 1-like [Chenopodium quinoa]
Swiss-Prot	Q9LQI9	Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1
TrEMBL	A0A803M8R1	RRM domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg15332, jg17991, jg25172, jg31770
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10939, gene_5582
Amaranthaceae	Atriplex hortensis	4	Ah012494, Ah015046, Ah015048, Ah028748
Amaranthaceae	Beta vulgaris	2	BVRB_7g169700, BVRB_8g190780
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg2012, Sbi_jg24705, Sbi_jg34491, Sbi_jg8567
Amaranthaceae	Salicornia europaea	2	Seu_jg20033, Seu_jg2755
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002815, GOSA_00002816, GOSA_00022700
Amaranthaceae	Suaeda glauca	5	Sgl42755, Sgl47500, Sgl47516, Sgl73441, Sgl76965
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000008121, gene:ENSEOMG00000011604 ... gene:ENSEOMG00000032587, gene:ENSEOMG00000039266, gene:ENSEOMG00000039716
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0006570, CQ.Regalona.r1.8AG0016480 ... CQ.Regalona.r1.8BG0017560, CQ.Regalona.r1.9BG0006480
Anacardiaceae	Pistacia vera	4	pistato.v30118540, pistato.v30119220, pistato.v30260380 ... pistato.v30287110
Apiaceae	Apium graveolens	4	Ag4G00169, Ag4G00216, Ag5G01496, Ag8G00377
Arecaceae	Cocos nucifera	2	COCNU_13G001900, scaffold004549G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103698716, gene-LOC103702254, gene-LOC103715545
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.667.V1.1, AsparagusV1_06.382.V1.1 ... AsparagusV1_08.2658.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G14815, Ftri3G11362, Ftri4G26549, Ftri8G29013 ... FtriNA08785
Brassicaceae	Arabidopsis thaliana	3	AT1G17370.1, AT1G54080.2, AT3G14100.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007746m.g.v1.0, Thhalv10011526m.g.v1.0 ... Thhalv10020804m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g15520.v2.2, Sp1g40520.v2.2, Sp3g12360.v2.2 ... SpUn0033_0030.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051090.2N, BniB03g027460.2N, BniB04g054880.2N ... BniB07g001800.2N, BniB07g055110.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0791, Ceq04G2158, Ceq06G0757
Casuarinaceae	Casuarina glauca	3	Cgl02G0802, Cgl06G0779, CglSG0081
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g03750, gene.Cymno03g11120, gene.Cymno05g09400
Dunaliellaceae	Dunaliella salina	1	Dusal.0390s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g22010, gene.Thate05g04730, gene.Thate05g25870
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3788, nbisL1-mrna-4605, nbisL1-mrna-820
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.169, evm.TU.LG07.1347
Plantaginaceae	Plantago ovata	3	Pov_00004000, Pov_00010227, Pov_00040923
Plumbaginaceae	Limonium bicolor	2	Lb3G16803, Lb3G17953
Poaceae	Echinochloa crus-galli	6	AH04.2001, AH08.2089, BH04.2029, BH08.2193, CH04.2367 ... CH08.2362
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_7AG0577050, gene-QOZ80_7BG0608410 ... gene-QOZ80_8AG0637430, gene-QOZ80_8BG0665950, gene-QOZ80_9AG0689850, gene-QOZ80_9BG0714670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0125330.1, HORVU.MOREX.r3.4HG0364220.1 ... HORVU.MOREX.r3.7HG0681680.1
Poaceae	Lolium multiflorum	5	gene-QYE76_030074, gene-QYE76_039724, gene-QYE76_039731 ... gene-QYE76_065875, gene-QYE76_066021
Poaceae	Oryza coarctata	6	Oco13G012620, Oco14G013340, Oco15G010720, Oco16G011830 ... Oco21G008590, Oco22G009820
Poaceae	Oryza sativa	3	LOC_Os07g42380.1, LOC_Os08g40880.1, LOC_Os11g40510.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G213900, gene-BS78_07G191000
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0103294, Pt_Chr0206367, Pt_Chr0306270, Pt_Chr0306376 ... Pt_Chr0403743
Poaceae	Sporobolus alterniflorus	11	Chr07G015330, Chr16G004670, Chr16G017360, Chr16G017610 ... Chr17G004160, Chr17G016720, Chr19G002300, Chr20G001800, Chr27G014980, Chr29G002120, Chr31G007510
Poaceae	Thinopyrum elongatum	3	Tel2E01G332300, Tel4E01G241100, Tel7E01G446000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG021440, gene_TRIDC2BG025450 ... gene_TRIDC4AG022910, gene_TRIDC4BG023790, gene_TRIDC7AG032400, gene_TRIDC7BG021950
Poaceae	Triticum aestivum	9	TraesCS2A02G169100.1, TraesCS2B02G195400.1 ... TraesCS2D02G176700.1, TraesCS4A02G150000.1, TraesCS4B02G148600.1, TraesCS4D02G150600.2, TraesCS7A02G252200.1, TraesCS7B02G138700.1, TraesCS7D02G250300.1
Poaceae	Zea mays	6	Zm00001eb035660_P002, Zm00001eb166710_P001 ... Zm00001eb174610_P001, Zm00001eb432840_P001, Zm00001eb432870_P001, Zm00001eb432880_P001
Poaceae	Zoysia japonica	3	nbis-gene-17450, nbis-gene-43159, nbis-gene-46100
Poaceae	Zoysia macrostachya	3	Zma_g18204, Zma_g19061, Zma_g24376
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.2492, evm.TU.LG12.1609, evm.TU.LG19.104 ... evm.TU.LG23.712, evm.TU.LG24.323
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g20860, gene.Posoc02g27420, gene.Posoc08g03760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.1428 ... evm.TU.Scaffold_10_RagTag.590, evm.TU.Scaffold_18_RagTag.784, evm.TU.Scaffold_4_RagTag.1026
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13893, nbisL1-mrna-25808, nbisL1-mrna-27532 ... nbisL1-mrna-6749
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12264, nbisL1-mrna-16111, nbisL1-mrna-2428 ... nbisL1-mrna-8406
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1385, nbisL1-mrna-22686, nbisL1-mrna-8138
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000004l.23, evm.TU.utg000008l.668 ... evm.TU.utg000033l.420, evm.TU.utg000079l.6
Rhizophoraceae	Kandelia obovata	4	Maker00000275, Maker00004005, Maker00015029, Maker00018917
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16489, nbisL1-mrna-2025, nbisL1-mrna-3966 ... nbisL1-mrna-7471
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14796, nbisL1-mrna-22838, nbisL1-mrna-8112 ... nbisL1-mrna-9356
Salicaceae	Populus euphratica	7	populus_peu02912, populus_peu04532, populus_peu04551 ... populus_peu11809, populus_peu13115, populus_peu33809, populus_peu37342
Solanaceae	Lycium barbarum	4	gene-LOC132619231, gene-LOC132633514, gene-LOC132636931 ... gene-LOC132645290
Solanaceae	Solanum chilense	4	SOLCI001632700, SOLCI004247100, SOLCI005327100 ... SOLCI006560600
Solanaceae	Solanum pennellii	4	gene-LOC107005345, gene-LOC107014842, gene-LOC107023548 ... gene-LOC107026105
Tamaricaceae	Reaumuria soongarica	2	STRG.12436_chr02_+, gene_534
Tamaricaceae	Tamarix chinensis	2	TC05G0499, TC10G0975
Zosteraceae	Zostera marina	2	Zosma03g25420.v3.1, Zosma06g17400.v3.1