Basic Information
Locus ID:
Ah015046
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 9869533 | 9878495 | + | Ah015046 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 30,246.07 Da | 62.59 | 64.22 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 1.42748E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 9.94888E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 1.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 5.1E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 229 | 2.01E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 46 | 135 | 3.36E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 135 | 7.4E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 223 | 1.4E-27 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 3.7E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 2.3E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.238032 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.983952 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 246 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021756703.1 | oligouridylate-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QES4 | Oligouridylate-binding protein 1-like OS=Spinacia oleracea OX=3562 GN=SOVF_192880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology