Basic Information
Locus ID:
Ah014917
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 8444964 | 8457677 | - | Ah014917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 124,801.22 Da | 53.30 | 81.01 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 21 | 77 | 0.00105705 | - |
| Pfam | PF04108 | Autophagy protein Apg17 | 370 | 492 | 5.0E-7 | IPR007240 |
| Pfam | PF10377 | Autophagy-related protein 11 | 957 | 1101 | 7.8E-16 | IPR019460 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 17 | 77 | 1.43E-6 | IPR029071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 711 | - | - |
| Coils | Coil | Coil | 160 | 180 | - | - |
| Coils | Coil | Coil | 951 | 981 | - | - |
| Coils | Coil | Coil | 842 | 862 | - | - |
| Coils | Coil | Coil | 800 | 827 | - | - |
| Coils | Coil | Coil | 620 | 640 | - | - |
| Coils | Coil | Coil | 642 | 676 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30790.1 | 0 | |
| RefSeq | XP_021750127.1 | autophagy-related protein 11-like [Chenopodium quinoa] | 0 |
| Q9SUG7 | Autophagy-related protein 11 OS=Arabidopsis thaliana OX=3702 GN=ATG11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MFG2 | ATG11 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15624, jg4019 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9213 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014917 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24781, Sbi_jg8647 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19959 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022276 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42563, Sgl47317 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009801, gene:ENSEOMG00000034568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017320, CQ.Regalona.r1.8BG0018270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265050 |
| Apiaceae | Apium graveolens | 2 | Ag10G02785, Ag4G02212 |
| Arecaceae | Cocos nucifera | 1 | scaffold001929G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722038 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3421.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G00996, Ftri4G21455, Ftri8G28263 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085020.2N, BniB05g007000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2613 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2763 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07310 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0384s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-45 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.316 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000767 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26629 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.582, BH07.708, CH07.588 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0103730, gene-QOZ80_2BG0157040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0569320.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021039 |
| Poaceae | Oryza coarctata | 2 | Oco03G004050, Oco04G004000 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g08350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G059900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202321 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G034020, Chr15G025290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G308400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG020550, gene_TRIDC6BG026460 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G149000.2, TraesCS6B02G177000.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb110220_P001, Zm00001eb206680_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33598, nbis-gene-44179 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12305 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2597, evm.TU.LG23.820 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g13410 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.183, evm.TU.Scaffold_10_RagTag.519 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13402, nbisL1-mrna-25334 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21236, nbisL1-mrna-8763 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16611, nbisL1-mrna-4905 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1257, evm.TU.utg000033l.119 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001287, Maker00015078 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16648, nbisL1-mrna-1937 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14569, nbisL1-mrna-9241 |
| Salicaceae | Populus euphratica | 3 | populus_peu05552, populus_peu05553, populus_peu12199 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602912, gene-LOC132605856 |
| Solanaceae | Solanum chilense | 1 | SOLCI004411200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026207 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9101 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0714 |
| Zosteraceae | Zostera marina | 1 | Zosma03g05980.v3.1 |