Basic Information
Locus ID:
Ah014845
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 7479148 | 7488906 | + | Ah014845 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 60,268.96 Da | 43.22 | 92.45 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 268 | 322 | 1.6E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 65 | 126 | 3.3E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 133 | 252 | 2.0E-16 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 65 | 321 | 2.24E-50 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 363 | 422 | 1.1E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 194 | 334 | 4.2E-25 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 57 | 190 | 1.1E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 268 | 297 | 1.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 225 | 254 | 3.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 95 | 124 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 128 | 157 | 0.0083 | IPR002110 |
| SMART | SM00248 | ANK_2a | 162 | 192 | 0.055 | IPR002110 |
| SMART | SM00184 | ring_2 | 366 | 415 | 0.003 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 162 | 183 | 9.940542 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 225 | 252 | 11.850801 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 128 | 160 | 9.778029 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 366 | 416 | 9.391148 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 128 | 159 | 8.693567 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 162 | 183 | 9.965 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 268 | 299 | 11.214048 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 95 | 127 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 225 | 252 | 11.88812 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 95 | 126 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 268 | 300 | 12.42232 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 381 | 390 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 284 | 298 | 4.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 226 | 241 | 4.1E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021731376.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology