Basic Information
Locus ID:
Ah014307
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_481_HRSCAF_623 | 1498952 | 1509259 | + | Ah014307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 124,985.38 Da | 39.15 | 78.67 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 923 | 957 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 495 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 538 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 427 | 962 | 4.79E-42 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 908 | 1107 | 6.12E-14 | IPR011044 |
| SUPERFAMILY | SSF101898 | NHL repeat | 355 | 453 | 2.41E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 698 | 3.8E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 519 | 3.5E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 840 | 1108 | 6.6E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 544 | 585 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 539 | 0.0059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 628 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1050 | 34.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 918 | 957 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 872 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 448 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 495 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 875 | 915 | 2.8 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.1E-14 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.632046 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 504 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 925 | 966 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 925 | 959 | 10.205597 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.694066 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_021760766.1 | topless-related protein 4-like [Chenopodium quinoa] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology