Basic Information
Locus ID:
Ah013919
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 99745044 | 99748955 | - | Ah013919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 48,086.86 Da | 39.58 | 68.44 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 372 | 412 | 8.8E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 163 | 296 | 1.16E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 95 | 156 | 3.4E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 367 | 418 | 2.79E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 150 | 297 | 2.2E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 359 | 416 | 6.2E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 370 | 412 | 10.928584 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021855141.1 | F-box protein At1g67340 [Spinacia oleracea] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0F6 | MYND-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_013430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology