Basic Information
Locus ID:
Ah013833
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 98820654 | 98829491 | + | Ah013833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 165,595.33 Da | 40.62 | 106.61 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 296 | 583 | 4.08016E-88 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1223 | 1444 | 2.12245E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 608 | 778 | 3.38594E-79 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 910 | 1200 | 1.78015E-81 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1242 | 1391 | 7.3E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 296 | 562 | 2.4E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 914 | 1150 | 2.2E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 635 | 765 | 2.9E-14 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 289 | 590 | 7.06E-25 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 910 | 1207 | 4.58E-45 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1219 | 1452 | 1.52E-63 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 824 | 3.86E-35 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1208 | 1462 | 5.9E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 875 | 1206 | 8.5E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 595 | 2.0E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 616 | 859 | 2.9E-48 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1251 | 1444 | 2.3E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 639 | 926 | 2.1E-5 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1225 | 1460 | 16.986931 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 296 | 575 | 31.01944 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 912 | 1188 | 32.510136 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 608 | 834 | 14.979471 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 738 | 752 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021746601.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9G4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_091770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology