Basic Information
Locus ID:
Ah012890
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 80605653 | 80611725 | - | Ah012890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 73,849.19 Da | 33.16 | 73.75 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 16 | 306 | 6.39451E-74 | - |
| CDD | cd10317 | RGL4_C | 466 | 632 | 8.95915E-42 | - |
| CDD | cd10316 | RGL4_M | 355 | 454 | 1.27982E-30 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 464 | 560 | 8.7E-21 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 379 | 450 | 3.5E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 7 | 211 | 1.0E-71 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 461 | 632 | 1.02E-37 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 18 | 304 | 1.1E-5 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 393 | 455 | 2.55E-8 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 16 | 316 | 4.8E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 462 | 632 | 3.2E-7 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021747845.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology