Basic Information
Locus ID:
Ah012884
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 80567679 | 80572054 | - | Ah012884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 76,384.96 Da | 27.34 | 78.10 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 371 | 466 | 2.70885E-34 | IPR029413 |
| CDD | cd10317 | RGL4_C | 479 | 667 | 1.8496E-51 | - |
| CDD | cd10320 | RGL4_N | 52 | 341 | 1.12453E-70 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 394 | 464 | 5.2E-22 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 477 | 666 | 2.0E-51 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 48 | 240 | 3.3E-61 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 475 | 667 | 3.91E-42 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 368 | 465 | 4.71E-13 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 54 | 331 | 5.34E-10 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 52 | 340 | 8.6E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 474 | 667 | 5.1E-19 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 368 | 466 | 4.9E-14 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021731282.1 | uncharacterized protein LOC110698188 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MAW7 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology