Basic Information
Locus ID:
Ah012829
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 78101833 | 78106994 | - | Ah012829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 67,344.40 Da | 41.80 | 97.84 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 1.6E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 5.0E-25 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 21 | 562 | 6.8E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 603 | 4.9E-178 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 6.5E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 396 | 420 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 338 | 361 | 75.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 2.3E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 456 | 479 | 230.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 312 | 334 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 505 | 530 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 20.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 8.649649 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_021756048.1 | protein AUXIN SIGNALING F-BOX 2-like [Chenopodium quinoa] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R4P9 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_107140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology