halophFGD

Basic Information

Locus ID: Ah012688

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Small ubiquitinrelated modifier

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_1312_HRSCAF_2063	73962875	73963057	-	Ah012688

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.55	7,088.11 Da	73.24	76.33	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01763	Ubl_SUMO_like	6	52	8.36587E-10	-
Pfam	PF11976	Ubiquitin-2 like Rad60 SUMO-like	11	52	1.8E-5	IPR022617
SUPERFAMILY	SSF54236	Ubiquitin-like	6	52	7.4E-9	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	58	1.4E-10	-

KEGG Pathway

KO Term:

K12160 (small ubiquitin-related modifier)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021852062.1	uncharacterized protein LOC110791611 [Spinacia oleracea]	0
TrEMBL	A0A803LTV3	Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg12833, jg21549, jg24566, jg38400
Aizoaceae	Mesembryanthemum crystallinum	5	gene_12218, gene_12219, gene_19208, gene_19209, gene_5389
Amaranthaceae	Atriplex hortensis	4	Ah008875, Ah008876, Ah012688, Ah028292
Amaranthaceae	Beta vulgaris	2	BVRB_4g088830, BVRB_7g167780
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg18295, Sbi_jg26565, Sbi_jg34000, Sbi_jg36674
Amaranthaceae	Salicornia europaea	2	Seu_jg15089, Seu_jg4634
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011903, GOSA_00017455
Amaranthaceae	Suaeda glauca	5	Sgl23444, Sgl28570, Sgl28745, Sgl73849, Sgl77351
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006748, gene:ENSEOMG00000008425 ... gene:ENSEOMG00000008491, gene:ENSEOMG00000027759, gene:ENSEOMG00000029934, gene:ENSEOMG00000036253, gene:ENSEOMG00000040380, gene:ENSEOMG00000041590
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0023330, CQ.Regalona.r1.4AG0023350 ... CQ.Regalona.r1.4BG0024640, CQ.Regalona.r1.4BG0024650, CQ.Regalona.r1.7AG0010120, CQ.Regalona.r1.7BG0012250
Anacardiaceae	Pistacia vera	2	pistato.v30014380, pistato.v30017900
Apiaceae	Apium graveolens	3	Ag10G00809, Ag5G01873, Ag8G01951
Arecaceae	Cocos nucifera	4	COCNU_02G008540, COCNU_02G014640, COCNU_15G004410 ... contig69436837G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695948, gene-LOC103710595, gene-LOC103710819 ... gene-LOC120105632
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.421.V1.1, AsparagusV1_04.1370.V1.1 ... AsparagusV1_05.3189.V1.1, AsparagusV1_09.795.V1.1, AsparagusV1_10.548.V1.1
Asteraceae	Flaveria trinervia	7	Ftri14G10346, Ftri14G11849, Ftri14G17667, Ftri15G15092 ... Ftri3G27886, Ftri7G09573, Ftri8G11220
Brassicaceae	Arabidopsis thaliana	7	AT4G26840.1, AT5G48700.1, AT5G48710.1, AT5G55160.2 ... AT5G55170.1, AT5G55855.1, AT5G55856.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10005530m.g.v1.0, Thhalv10015081m.g.v1.0 ... Thhalv10015094m.g.v1.0, Thhalv10015519m.g.v1.0, Thhalv10026654m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g19110.v2.2, Sp6g17100.v2.2, Sp7g24800.v2.2
Brassicaceae	Brassica nigra	8	BniB02g033820.2N, BniB02g034610.2N, BniB02g082630.2N ... BniB03g007480.2N, BniB03g012350.2N, BniB05g010560.2N, BniB05g035040.2N, BniB08g015300.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq01G1346, Ceq01G2223, Ceq01G2231, Ceq02G0302, Ceq02G2347 ... Ceq06G1983, Ceq09G0359
Casuarinaceae	Casuarina glauca	7	Cgl01G1508, Cgl02G0315, Cgl02G1009, Cgl02G1280, Cgl02G2434 ... Cgl04G2822, Cgl06G2091
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno08g02980
Dunaliellaceae	Dunaliella salina	3	Dusal.0126s00004.v1.0, Dusal.0621s00011.v1.0 ... Dusal.0770s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g02060, gene.Thate05g16390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9848
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.1576, evm.TU.LG04.2125, evm.TU.LG11.1159 ... evm.TU.LG11.557, evm.TU.LG11.559
Plantaginaceae	Plantago ovata	11	Pov_00001141, Pov_00003838, Pov_00004366, Pov_00004367 ... Pov_00008503, Pov_00008506, Pov_00008766, Pov_00008767, Pov_00009548, Pov_00010590, Pov_00040175
Plumbaginaceae	Limonium bicolor	5	Lb2G15033, Lb3G20750, Lb4G22299, Lb4G22300, Lb4G25402
Poaceae	Echinochloa crus-galli	6	AH01.1549, AH02.4316, BH01.1754, BH02.4347, CH01.1832 ... CH02.4392
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0044450, gene-QOZ80_1BG0090240 ... gene-QOZ80_1BG0094470, gene-QOZ80_5BG0437620
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0309800.1, HORVU.MOREX.r3.3HG0309820.1
Poaceae	Lolium multiflorum	3	gene-QYE76_014972, gene-QYE76_057385, gene-QYE76_057386
Poaceae	Oryza coarctata	4	Oco01G028420, Oco02G029500, Oco02G029510, Oco14G011430
Poaceae	Oryza sativa	2	LOC_Os01g68940.1, LOC_Os01g68950.1
Poaceae	Paspalum vaginatum	3	gene-BS78_09G210300, gene-BS78_09G211300 ... gene-BS78_09G211500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0600503, Pt_Chr0600504
Poaceae	Sporobolus alterniflorus	7	Chr02G002590, Chr03G022730, Chr04G014780, Chr05G031840 ... Chr08G019290, Chr19G014740, Chr27G001370
Poaceae	Thinopyrum elongatum	2	Tel3E01G672900, Tel3E01G673100
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG060130, gene_TRIDC3AG060140 ... gene_TRIDC3BG067930, gene_TRIDC3BG067950
Poaceae	Triticum aestivum	5	TraesCS3A02G424000.1, TraesCS3B02G459900.1 ... TraesCS3B02G460000.1, TraesCS3D02G419200.1, TraesCS3D02G419300.1
Poaceae	Zea mays	2	Zm00001eb364660_P001, Zm00001eb364680_P001
Poaceae	Zoysia japonica	3	nbis-gene-11003, nbis-gene-28358, nbis-gene-57125
Poaceae	Zoysia macrostachya	2	Zma_g11807, Zma_g9262
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.496, evm.TU.LG02.497, evm.TU.LG07.45 ... evm.TU.LG08.168, evm.TU.LG09.1740, evm.TU.LG09.1741, evm.TU.LG12.688
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g04270
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_5_RagTag.1217, evm.TU.Scaffold_5_RagTag.1557 ... evm.TU.Scaffold_7_RagTag.141, evm.TU.Scaffold_9_RagTag.1121
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-11689, nbisL1-mrna-12046, nbisL1-mrna-1706 ... nbisL1-mrna-19585, nbisL1-mrna-20380, nbisL1-mrna-20521, nbisL1-mrna-21064
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-1215, nbisL1-mrna-14864, nbisL1-mrna-8599 ... nbisL1-mrna-9085
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10950, nbisL1-mrna-11233, nbisL1-mrna-22277 ... nbisL1-mrna-2629
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.174, evm.TU.utg000003l.695 ... evm.TU.utg000006l.710, evm.TU.utg000006l.898, evm.TU.utg000028l.85
Rhizophoraceae	Kandelia obovata	4	Maker00001830, Maker00010392, Maker00013274, Maker00013724
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10426, nbisL1-mrna-12251, nbisL1-mrna-1365 ... nbisL1-mrna-8049, nbisL1-mrna-9831
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15499, nbisL1-mrna-18118, nbisL1-mrna-19916 ... nbisL1-mrna-22651, nbisL1-mrna-4945
Salicaceae	Populus euphratica	4	populus_peu17917, populus_peu26982, populus_peu31042 ... populus_peu31043
Solanaceae	Lycium barbarum	10	gene-LOC132600850, gene-LOC132610077, gene-LOC132610495 ... gene-LOC132611387, gene-LOC132612732, gene-LOC132614576, gene-LOC132616634, gene-LOC132617422, gene-LOC132636668, gene-LOC132640780
Solanaceae	Solanum chilense	6	SOLCI000134700, SOLCI002062100, SOLCI004418800 ... SOLCI004418900, SOLCI005761200, SOLCI006755200
Solanaceae	Solanum pennellii	5	gene-LOC107007516, gene-LOC107024154, gene-LOC107026005 ... gene-LOC107029314, gene-LOC107030885
Tamaricaceae	Reaumuria soongarica	4	STRG.816_chr01_+, gene_10011, gene_12123, gene_14638
Tamaricaceae	Tamarix chinensis	4	TC01G2372, TC03G1361, TC06G0390, TC06G1115
Zosteraceae	Zostera marina	1	Zosma04g01500.v3.1