Basic Information
Locus ID:
Ah012439
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 66250761 | 66251825 | - | Ah012439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 39,680.89 Da | 53.49 | 81.30 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 213 | 0.067 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 45 | 313 | 8.98E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 354 | 2.3E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 264 | 304 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 213 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 172 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 117 | 200.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 307 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 222 | 8.770704 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021736101.1 | WD repeat-containing protein LWD1 [Chenopodium quinoa] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MMM7 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology