Basic Information
Locus ID:
Ah011942
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 41776725 | 41777861 | + | Ah011942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 43,040.89 Da | 42.24 | 86.03 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 40 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 66 | 2.88E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 4 | 44 | 4.1E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 99 | 337 | 5.8E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 9.206031 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027064321.1 | F-box protein At3g07870-like [Coffea arabica] | 0 |
| TrEMBL | A0A068V2F1 | F-box domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00042126001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21148 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah011940, Ah011942, Ah024114, Ah024659, Ah024705 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8885 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19717 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42044, Sgl46820, Sgl74330, Sgl77883 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.396 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19351 |