Basic Information
Locus ID:
Ah011940
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 41766847 | 41773985 | + | Ah011940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 44,420.45 Da | 37.80 | 97.86 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 40 | 7.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 124 | 1.7E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 85 | 1.8E-5 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 2.8E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 97 | 342 | 2.2E-10 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 12.120415 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027156796.1 | F-box/kelch-repeat protein At3g23880-like [Coffea eugenioides] | 0 |
| TrEMBL | A0A2R6QVI8 | F-box/kelch-repeat protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc13260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21148 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah011940, Ah011942, Ah024114, Ah024659, Ah024705 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8885 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19717 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42044, Sgl46820, Sgl74330, Sgl77883 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.396 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19351 |