Basic Information
Locus ID:
Ah011649
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 30734109 | 30735160 | + | Ah011649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 20,318.12 Da | 85.65 | 49.95 | -0.79 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021761086.1 | E3 ubiquitin-protein ligase RHF1A-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0J8BCS4 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g123950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12535 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15596 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah011649, Ah011922, Ah020230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5047, Sbi_jg6818 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13002 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003843 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00365, Sgl05443 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013669, gene:ENSEOMG00000031850 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013960, CQ.Regalona.r1.3BG0014030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30237250 |
| Apiaceae | Apium graveolens | 1 | Ag8G01632 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G28976 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025539m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015890.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1035, Ceq09G1906 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1080, Cgl09G2079 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1092 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1699, evm.TU.LG11.1057 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11340 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.475, evm.TU.Scaffold_6_RagTag.711 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15979 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12539 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-591 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.428, evm.TU.utg000019l.934 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006879, Maker00012590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15345, nbisL1-mrna-6332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2096 |
| Salicaceae | Populus euphratica | 2 | populus_peu07348, populus_peu21343 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004394200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032476 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9357 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1426 |