Basic Information
Locus ID:
Ah011401
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Mini zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 23767828 | 23790845 | + | Ah011401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 47,072.37 Da | 37.95 | 105.75 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17546 | REC_hyHK_CKI1_RcsC-like | 16 | 105 | 7.70356E-16 | - |
| Pfam | PF04770 | ZF-HD protein dimerisation region | 363 | 408 | 8.1E-22 | IPR006456 |
| Pfam | PF00072 | Response regulator receiver domain | 16 | 109 | 8.1E-10 | IPR001789 |
| SUPERFAMILY | SSF52172 | CheY-like | 148 | 216 | 2.13E-11 | IPR011006 |
| SUPERFAMILY | SSF52172 | CheY-like | 236 | 331 | 1.71E-14 | IPR011006 |
| SUPERFAMILY | SSF52172 | CheY-like | 13 | 106 | 1.71E-15 | IPR011006 |
| Gene3D | G3DSA:3.40.50.2300 | - | 1 | 111 | 6.4E-16 | - |
| Gene3D | G3DSA:3.40.50.2300 | - | 229 | 294 | 1.7E-11 | - |
| Gene3D | G3DSA:3.40.50.2300 | - | 139 | 205 | 1.6E-11 | - |
| SMART | SM00448 | REC_2 | 13 | 124 | 2.2E-5 | IPR001789 |
| SMART | SM00448 | REC_2 | 237 | 328 | 0.0029 | IPR001789 |
| TIGRFAM | TIGR01566 | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 364 | 407 | 1.5E-19 | IPR006456 |
| ProSiteProfiles | PS51523 | Zinc-finger ZF-HD dimerization-type profile. | 358 | 407 | 19.615973 | IPR006456 |
| ProSiteProfiles | PS50110 | Response regulatory domain profile. | 149 | 332 | 18.34343 | IPR001789 |
| ProSiteProfiles | PS50110 | Response regulatory domain profile. | 14 | 126 | 19.956568 | IPR001789 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74660.1 | mini zinc finger 1. Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to auxin, brassinosteroid and cytokinin, but normally responsive to ethylene. | 0 |
| RefSeq | XP_021740841.1 | two-component response regulator ARR22-like [Chenopodium quinoa] | 0 |
| Q9CA51 | Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MAJ4 | Response regulatory domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology