Basic Information
Locus ID:
Ah010931
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 15554870 | 15556234 | - | Ah010931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 52,492.79 Da | 38.24 | 93.11 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 37 | 4.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 52 | 5.1E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 35 | 4.2E-7 | - |
| SMART | SM00256 | fbox_2 | 1 | 39 | 4.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 198 | 373 | 6.0E-12 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021749728.1 | F-box/kelch-repeat protein At3g06240-like [Chenopodium quinoa] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MQD5 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah010927, Ah010931, Ah014397 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g194800 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg40732 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010294 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0021450, CQ.Regalona.r1.8BG0020900 ... |