Basic Information
Locus ID:
Ah010624
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 11726247 | 11734305 | - | Ah010624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 169,667.84 Da | 37.95 | 106.08 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1266 | 1486 | 1.28685E-119 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 620 | 820 | 7.1038E-111 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 923 | 1243 | 4.07171E-85 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 307 | 594 | 1.22268E-91 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 305 | 573 | 8.0E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1052 | 1192 | 9.8E-14 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1285 | 1433 | 6.8E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 925 | 1023 | 1.7E-9 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 638 | 772 | 4.1E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 922 | 1249 | 9.42E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1260 | 1497 | 2.57E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 294 | 606 | 1.96E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 842 | 1.51E-56 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 278 | 602 | 9.6E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1251 | 1504 | 2.4E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 603 | 855 | 1.4E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 889 | 1249 | 2.6E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1294 | 1479 | 5.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 647 | 820 | 6.1E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 925 | 1231 | 32.029083 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 306 | 586 | 30.207542 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 620 | 843 | 22.669174 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1268 | 1502 | 19.227816 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 745 | 759 | - | IPR017871 |
| Coils | Coil | Coil | 467 | 487 | - | - |
| Coils | Coil | Coil | 880 | 900 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology