Basic Information
Locus ID:
Ah010622
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 11707630 | 11716205 | + | Ah010622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 170,206.56 Da | 37.99 | 106.84 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 6.55436E-110 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1269 | 1489 | 9.85425E-115 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 309 | 596 | 4.57652E-88 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 925 | 1246 | 5.24708E-86 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1288 | 1436 | 3.9E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 7.0E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 307 | 575 | 2.7E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 927 | 1025 | 7.7E-10 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1056 | 1195 | 7.3E-13 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 844 | 1.74E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 296 | 608 | 1.14E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1264 | 1497 | 5.82E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 924 | 1253 | 7.85E-40 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 283 | 604 | 1.1E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 607 | 859 | 2.6E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1254 | 1507 | 5.0E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 890 | 1251 | 4.4E-54 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1297 | 1489 | 2.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 3.5E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 927 | 1234 | 31.690636 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 845 | 22.469095 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1505 | 18.887682 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 308 | 588 | 30.066839 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 855 | 889 | - | - |
| Coils | Coil | Coil | 469 | 489 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology