Basic Information
Locus ID:
Ah010523
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 10616101 | 10622717 | - | Ah010523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 64,612.19 Da | 46.96 | 79.75 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 122 | 154 | 2.4E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 122 | 163 | 2.09E-9 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 218 | 432 | 3.7E-13 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 102 | - | - |
| Coils | Coil | Coil | 476 | 500 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021732151.1 | putative F-box/kelch-repeat protein At1g12870 [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LMX7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 14 | Ah010513, Ah010514, Ah010515, Ah010517, Ah010518, Ah010519 ... |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11619 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014872, gene:ENSEOMG00000039400 ... |
| Amaranthaceae | Chenopodium quinoa | 12 | CQ.Regalona.r1.7BG0009460, CQ.Regalona.r1.7BG0009480 ... |