Basic Information
Locus ID:
Ah010459
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
B3 domain-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 9902523 | 9906646 | + | Ah010459 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 79,477.03 Da | 39.02 | 82.29 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 56 | 1.2E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 89 | 4.58E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 53 | 4.4E-5 | - |
| SMART | SM00256 | fbox_2 | 16 | 57 | 0.0027 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 404 | 603 | 8.3E-13 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 121 | 318 | 1.5E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021742823.1 | F-box protein At1g67130-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RC38 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_087520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 12 | Ah008721, Ah008722, Ah010459, Ah010460, Ah010461, Ah010463 ... |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18919, Sbi_jg37371, Sbi_jg46783 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg20868, Seu_jg20869, Seu_jg495, Seu_jg5210 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7BG0009470 |